knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)
Velocyto counts are loaded
## reading loom file via hdf5r...
## reading loom file via hdf5r...
## reading loom file via hdf5r...
## reading loom file via hdf5r...
## [38;5;246m# A tibble: 100 x 4[39m
## [38;5;246m# Groups: case_id, donor_id [25][39m
## case_id donor_id run_id deltasum
## [3m[38;5;246m<chr>[39m[23m [3m[38;5;246m<chr>[39m[23m [3m[38;5;246m<chr>[39m[23m [3m[38;5;246m<dbl>[39m[23m
## [38;5;250m 1[39m IKP007S donor0 sc10x05a 0
## [38;5;250m 2[39m IKP007S donor1 sc10x05a 0
## [38;5;250m 3[39m IKP007S donor2 sc10x05a 0
## [38;5;250m 4[39m IKP007S donor3 sc10x05a 0
## [38;5;250m 5[39m IKP007S donor4 sc10x05a 0
## [38;5;250m 6[39m OT108 donor0 sc10x05a 0
## [38;5;250m 7[39m OT108 donor1 sc10x05a 0
## [38;5;250m 8[39m OT108 donor2 sc10x05a 0
## [38;5;250m 9[39m OT108 donor3 sc10x05a 0
## [38;5;250m10[39m OT108 donor4 sc10x05a 0
## [38;5;246m# … with 90 more rows[39m
## An object of class Seurat
## 100542 features across 30216 samples within 3 assays
## Active assay: RNA (33514 features)
## 2 other assays present: emat, nmat
## An object of class Seurat
## 100542 features across 16749 samples within 3 assays
## Active assay: RNA (33514 features)
## 2 other assays present: emat, nmat
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## 2